DreINT0137928 @ danRer10
Intron Retention
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21150635-21155180:-
Coord C1 exon
chr15:21155024-21155180
Coord A exon
chr15:21150710-21155023
Coord C2 exon
chr15:21150635-21150709
Length
4314 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CTGTTTCTCCTCTATCATAGGGT
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTTGACTGCCTTTGTCCTGAAGTCTTTTGTCAAAGCACAGAAATACATATATATAGATCCACAAATTATTAAGAGTGCAAAGAAGTGGTTAATAGGTACACAGGATCCAGAAGGCTGTTTCATCCAGCATGGAAGACTATTCAACAACAGACTGAAG
Seq A exon
GTTTGTCAACTCACTGCCACAATAAAATGTGCATTACTATAACTCTGGAGGTCACATGAACCATTCCTTTGACACCATCATATTGGCAGGCAGGAACCGTCATAAATGAATACAAAATGTATGGGACCAGCATTAATTTTAAGACAACAGAGCTCACTGTGAACTTTAATTGATATAATGTGTTTCATTGATAAAATGGACAGCTTTCCTGACTATGATTAACATCTTTACAGATATTAAGAAATTTAATGCTCTAGAAGAAAACAAGATACAATAAGAGCTGTTACGATTTTAAAGATGGTGAGTCAAGGGGAAGGAGAGTAACATTAATTTTGGTGAAATCAACAAGTGAGTGACAAAATACCAAGACTAACAAAATGCAATAAAATGAGTTTATTTACAAAGATGGTGATAATAATAAATGCAAAAACATGTATATAGAAACAACAATAAATGTTTACAAGGATATATTGAAATTTACAGACAACAAATGGGACAAAAGATGTTTGAACAGATTGATGAGAGAGTTGGAGAGATGAGACGCGGGCGGCATCCAAACAATAGAAATAAATAAAACAAAACAATCTATTGGCCCAACCGCTACCCTAACTATCCAAAAGAAAAATACAGCAATTATCGTAAAGAAATCTTCGCGTCTATTACGCACTACCTAACCTACTCTAATATATACTATGAGAAAACAAAAGTACAGTGGGTGGAGCACGCCCCGTGCCTAGTGTGTCTAATAACAGCGATAATCAAAACTACATGTGCACAATGTATGTCAAGTGACATTCTTACCTGTCCCACTCTCCAACCTCAGATGTGCATAACACTGACGGTAGACAAATAGAGAACACACACATAACAACGGACAAATAACAAATTGTAACACACTGAAAACAGATTGCAATTTCACTGACACACAACACAACACAGAAATTCAGGGCCTCTCGAGTAGCGTCCTGTCAGCACTTTTATACCACGGTGGCAGCGGCTGGATTGCAGACGATGGGTGATGTCAGGGAGGAACATGGCAAACAGCTGGGCGGTGGTAGCCACTCGGAGCCACTGTATGGGTGAAAGTGGGAGAGAGGGAGAGAGCGAGTGAGCACAGGAAGAGAGAAAGACTAGCGAAAATAATAATAATAATCACGCAACACAGAAATGTACAGGAATGTAACAAGAGCCCAGAGTGAAAACGTTTGAACAGATTTCAAAATTGTTCTAATTGTGTTGAAACATATATTGTATATTCCATTTAGTTCTGCCCAGTGGAAGCAACAGAAAATATTAGGCACCTTTTTTTACACCTTTTCCAAATTTACATTTTAGCACTTTGCCCAAAGCCTAACAATAAATCACTGTCATTTACAGCCTTAAAAGTAATTTACTACCATCTTAAATGTGCCACCTTTTATCTTATATTTATGTTAATTTTATGCATTGTTCACTTATAAAGCAGTAATGCATTTTGTCTTTTTCAACTGAAACTAAAGGGCACAGATAGATTAAAAAAAGACACATACACAGACTCCAAACACTTTTACCCTCTAGCTGTTACTGCACAAGATGTCCTTCTGGAGCATCAGTTAGCATTTACAGCTTTTCTTTCAAAGACCAGTTGAAACAAATGTAGAAAATTAAGTTGACTAAGATGGCACATTTGCAACAAGTGCGTTTGATTTTATCACTGTTAAATATTTCACACTCAGCTGTTGTAGCATTATTTACTTTAAACACAACATGAGTTCATGTGTGAATAATGGCTAAGTTAAATATTTACTAATACTTACACTGCTGTGTTTAAACTTAAAGATCATGTACGTCCATCTAGTGTGTTTACATTAAAAAGCAATGGAAAAGTAAAAAGTGTTCATAAAGTGTAAATAAAGTAACATTAAGTTTACATATTAATTCAACTGACCTTTACTTATATAGCACTTTTACAATGTAAATTGTGTCAAAGCAGCTTCACATAGATCATAGTAAATTGAAAAAGTGTACTTCAGTTTTCAGTAGGGTTGGGTAGAATTTGGGTTTTTTTCGATACCAGTGCAAAATCGATACTTTTAAAATGATATCCCTCAAAGCTGTTTAGAATGAAACATTTAGAGATGGTATGACACAAAGCGTACTTATGTGTGTCTTTGATGCACCCCTTATTGCTTCTTAAAGGTGGCACACAGCAGATGTCCCGCTCAGAGCTGCGGCACGGCGCACACATGACAGTTGATAGTATCACACACCAGAAGTGCACGTAAAATATTCAGATGGCCCTTTGTGGCGTGGCAGAAATATGAACAGTCACGAGTCTTGGCTGGGTGCCTCGGACAGCCGCTGACTTGCAAATTCTACAATATATGGCGCTGCACGTCACTTCTGGTGCACGACCTGCTTTACGTTCTTGTTGCAGCATCAGTGGCACCAGAATATGGCACTGAAATTCATATGCTGATTTGATACGGTGCATACCGGTTCCGTTTCAGTACCCAACCCTAGTTTTCAGTGTTTAAGTTCAGTCTAGTTCAGTTCAGTGTGGTTTAATACTCACTATTGAGAGTCCAAATACTGAAGAGCAATCCATTGATGCACAGCTCTACAGATCCCGAACCATGCAAGCCAGAGGTGACAGCGGCGAGGAAAAAACTTCATCAATTGGCGAATTTGAAGAATTAAAAAACCTCGAGAGAAACCAGGCTCAGTTGGGCACGACCATTTCTACTATGGCCAAACGTTTTGTGCAGAGCTGCAGTCTAGGCGCCGGAGGCTGGAGAATGCTGGACCTCAGCGAAGACTTCTCTGTCCCTGGAGCGTCTCATGCTCTTCACTCCTTCAAGACCACCACAGCAGCTGCTCAGGATACGGCCTGGTCCAGGATTATGGAAACCTTGGGATCATCTCATCACTGGTCTTGGATCGAATCAGTGGCACTGCATAGTCTGAGGGCCTCAGGATGAGTATCCCCAGGTGGAAATAGAGAATAAAGAGAATAATTAGCGTAGCTGCTGTTCATAGTGTATATAAACAAGCGTGGGGCACATCCATGTATTATAACACTAAGTGATGCACTGAGTGTATGCTTTACTAAAATGATAGGTCTTTAATCTAATTTTGAACTGCGAGAGTGTGTCTGAGCCTCGGACATTATCAGGAAGGTTATTCCAGAGTTTAGGACCCATAAATGAGAAGGCTCAACCTCCTTTACTCACTTTTGCTATTTTAGGTACTACCAGAAGCCCTGAGTTTTGAGATCTTAAAGAGCAGGTTCGATTGTAGCGAGAAAGGAGGTTGGTTAGATAAACAGAAGCTAGATTATTTAAAGCTTTATAGGTAAGAAGTAATATATTACAGGAAACTTAACAGGCAGGGTGATATGATCATATTTTCTAGACCTGTTAAGAACTCTGGCAGCTGCATTTTGTACTTCTAGAAGTTTGTTAAAAGAGGATGCTGGGCCACCAGCCAACAGTGCATTACAGTAGTCCAGCATCTTTTTCAGCAATATTAGCGTCAGCAATATTTCTCAGATGAAAGAAGGCAGTTTTTGTGACATGCGAGATATGATTTTCAAAAGTTTAATTGTTGTCTAATATGACACACGATTTTTTATAGTAGAGCTAATGCTAACTTTGTATGCCTCTAATTGCAGGTTGAGTTGTGAGATCTGCTGTGTACAGGATTTAGGCCCAATAAGTAATAATTCTGTTTTGTCTTAAGAGAAGAAAATTGTTGGCCATCCAGTCTTCAATGACTCAGTTAGTTCAGACATCTCATCAGGTTTAGTTGAAATATATAATTGAGTATCTGCATAGCAGTGAAAGCTGATCCCATGTCTTCTAATAATGTTTCCCAGGAGTAACATGGATATTGTGAACACCAAAGAGCCTAAAACTGATACTTGAGACACCCCATACTTTACTGAGCTGACTTGTGAAAGCTGCCCATTAATATTCACAAACTGGTAACAGTAACTGGTCAGCTAAGTATGAGTTAAACCATTGTACAGTCTGTGGACACCTTTAGAATTTAAGCGATTTATGAGGATATTGTGGTCGATAGTGTCAAATGCGACACTAAGATTGAGTAAAATTAATAGCGAGATGGACCCTTGGTCAACAGTTAAGAGTAAATCGTCATTAATACATCATTATTCATGTATTGTTATTGTAAGGTGTTACCAGCCTTGACAAGACTGCAAATGTTACAATTCTTTTGTTATATTTAGAATTTTTCACATCAATTTTTTTCTATATGTATATTTCTTTACTAGATTGTGGTGCTTTATTTACCGCTGTTTCTCCTCTATCATAG
Seq C2 exon
GGTGGAGTCAGTGATCATGTGACAATGACGGCCTACATTACTGCATCACTGCTTGAACTGGAAACTTCAGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315:ENSDART00000142311:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]