DreINT0000079 @ danRer10
Intron Retention
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21298282-21298736:-
Coord C1 exon
chr15:21298521-21298736
Coord A exon
chr15:21298432-21298520
Coord C2 exon
chr15:21298282-21298431
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTATTTCACTATCGTCACAGGTT
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTCTTGTCCAAAGGAGTGATTGTTCGTCATGGATATGAGAAGCTTGAAGTGAAGTCTTCTTCTAACAGAGTATCAAGTGGCACAGTGTCCTTCAAACTGTCTGTTGGTGCAGATGTGGCTCCTGTAGTGCAAATTCTGGTGTACTGTGTTCTGCCCAGTGAAAATATTGTTGCTGCAAACAAAAGATTAAGCATTGAAAAATGTTTTGGTAATAAG
Seq A exon
GTATGTGTTGTAGCAGGTTAAAGATAATCTACTTTATACTGTATTTCTGTTTGAGTCCTAAAAAAAATCCTATTTCACTATCGTCACAG
Seq C2 exon
GTTTCTCTGCAGTTTTCTCCTGCTAAAGCAGTTCCTGGTGAGAAAAACACTCTCCAGCTCTCAGCTCAGCCTGGTTCACTGTGTGGCCTCAGTGCTGTAGATCAGAGCGTCCTGATCCTGGAGTCAGGCAAACGTCTGGATGCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685:ENSDART00000155787:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(47.0=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(25.8=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTACTGTGTTCTGCCCAG
R:
TGATCTACAGCACTGAGGCCA
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]