HsaINT0000063 @ hg38
Intron Retention
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr12:8846077-8847698:+
Coord C1 exon
chr12:8846077-8846222
Coord A exon
chr12:8846223-8847548
Coord C2 exon
chr12:8847549-8847698
Length
1326 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TATACCTTTCCCTTCCCCAGGTT
3' ss Score
11.04
Exon sequences
Seq C1 exon
GACTGAAAGCCTCCTTCTCTCTCTCACTGACCTTCACTTCGAGACTGGCCCCTGATCCTTCCCTGGTGATCTATGCCATTTTTCCCAGTGGAGGTGTTGTAGCTGACAAAATTCAGTTCTCAGTCGAGATGTGCTTTGACAATCAG
Seq A exon
GTAAAATGATAGCGGAGAAGGGTGAAGATAAAAGTTGGGCATAGAGAAAGATCTTGTGTGTGCTGCGGTTGGAAACAAGACAAGTCAGGGAAAGAAGATAGTGTTGACGTTGGATGTTGTATTATATTTATATCTTTAGTGTTTGGGGTTTGTGTTGAAATCCATCTCTCTCCTACTTTTTATTTTAAGAAGTCATGCTGGCTGAGGTGCAGTGGCTCACTCCTGTAATCCCAGTGCTTTGGGAGGCCAAGGCAGAGGGATTTCTTTAGGTCAAGGGTTCAAGACCAGCCTGGACAACATAGCAAGATCCTGTCTGTACAAAAAAATTTTTAATTAGCTGGGTGTGCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGATGCTAGGAGTTCAAGACCAGCCTGGTGAAACCGTGTCTCTACTAAAAATACAAAAATTAGCCAAGCATGGTGGTGGATGCCTGCAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCATGAACCCAGGAGACGGAGGTTGCAGTGAGCAAAGAACACACCATTACACTCCAGCCTGAGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAATTAGTTGAGTGTGGTGATGCATACCTGTAGTCCCAGCTAGTCGGAAGGCTGAAGCAGGTGTATCGCTTGAGCCCAGGAGTTCAAGGCTGCAGAGCGAGACCCTGTCTATTTTTTTTATTTTTTATAGACAGAGCTTTCCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCTTGCCTCAGACTCCCGAGTAGCTGGGATTACAAGTATGCACCACCATGCCTGGCTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTCATCCACCTGCCTTGGCCTCCCAATGTGCTGGGATTACAGGCATGACCCTGTCTCTATTAAAAAAAAAAAAAAAAAAAGCCATACTGGGAAGCCACATGTTCTATATAGTTATTCCACATGTTCTCTCTACTTTTTGTCTTCTAAACTTTCTCTATCCTTCTACTGTGCTGCTCACGTTTCCCAACTCTATCACGGCATACACGTCCTGAAGAGCTAGACTTTACAAAGAAAGATAAGTACAAAAGTGAAAGAATGGGTTGGATGTCATAGCTGGGGCATATTTGCTGATGACCCAAATTATGTTGTTTCCCTTCCTTTCCAGGCTGACCTGATCCCCAAGTTATACCTTTCCCTTCCCCAG
Seq C2 exon
GTTTCCCTTGGCTTCTCCCCCTCCCAGCAGCTTCCAGGAGCAGAAGTGGAGCTGCAGCTGCAGGCAGCTCCCGGATCCCTGTGTGCGCTCCGGGCGGTGGATGAGAGTGTCTTACTGCTTAGGCCAGACAGAGAGCTGAGCAACCGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535:ENST00000299698:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.2=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(26.2=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCTCCTTCTCTCTCTCACT
R:
GGTTGCTCAGCTCTCTGTCTG
Band lengths:
286-1612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development