DreINT0000454 @ danRer10
Intron Retention
Gene
ENSDARG00000063407 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
Coordinates
chr16:1290095-1292596:+
Coord C1 exon
chr16:1290095-1290263
Coord A exon
chr16:1290264-1292451
Coord C2 exon
chr16:1292452-1292596
Length
2188 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TACATTTATCACGTGTGCAGTGC
3' ss Score
5.44
Exon sequences
Seq C1 exon
TGGTGGGAACGGCACTCAGCGCAGAGACGTCATCTGTGTGAGGAAGAGCGGCAGTGAGTTTACGGTCAGCAGCTCCAGCGACTGCTCTCACCTGGAGAAACCCTCACCTGTGCAGCCCTGTGAGCTGCAGCCCTGCACACCACAGTGGTTCACCACCGACTGGAGCACG
Seq A exon
GTGAGCGTCAGCGGCCGTCTGCCTACCTGACTGTCTGTCTGACTGTTTGTCTATCTGTCCATCTCTCTGTCCGTCTGTCCATCTGTCTGTCTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCCTCTGTCCATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTTTCTGTCTATCTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTATCTGTCTTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCCATCTGTCCTTCTGTCTGTTCATCCATTTGTTTGTCTGTCTGTCCATCTGTCTCTCTATCTGCCTGTCTATCTGCCTGTCTGTCTGTCCGACCACCCGTCCGTCTGTCCATCTGTCTGTCTGTTCATCTGTTTGTCTGTCCCTCTGTCTGTCTGTCTGCCTGTCTGTCTGTCTGCCTGTCCGTCTGTCTGTCTGTCTGTCTGTCTCTCCATCTGTCCATCTGTCTGTTTGTTTATCTGTCCAATTATCTGTCTGTCTGTCTGTCCGTCCGTCTGTTTGTCTGTCTGTCTGTCTGTTTGTCCATCGGTCTGTCTGTTTGTTTGTCTGTCTGTCAGTCCGTCCGTCCATCCGTCCATCCGTCTGTCTGTCTGTCTGTCCGTCCATCTGTCTGTTTGTCTGTCTGTCCATTTGTCTGTCTGTTTGACCGTTCATGCATCCGTCTGTCCATCTGTCTGTCTGTTTATCTGTCTCAGTCTGTCTGTCTGTCATCCATCCGTCCGTCCATCCGTCTTTCTGTTTGTCCCTCTCTCTGTCCGTCTGTCTGTCTTTCTGTCCATCCACCCGTCCATCTGTCTGTCCGTCTGTCTGTCTGTCCCTCTCTTTGTCCATCAGTCTCAGTCTGTCTAACTGTCTGTGGGTTCTTCAGTCTATTTGTTTGTCTGTCCCTCTGTCTTTCTATCCCTCTGTCCATCCGTCCTACCTTTTATTATATGCCAGCTACTTTTTAAGGAACTGAAAGGGGCGAGAACTACTCATGTCATGGTCACTAAATCTTTCAAATTGATAATATATTCAGCTGACGGCAGAATGAATAGCCCTTCTGTTCAATTTGAATTCTTTTACAAATTTTCCCAAGGTCTGTTCAACGTAGAGAAGACACTAAGAATAACAGTTTTTCCATGATGACAGCACTTAATATTTGACTAGATGTTCTTTAAGACTCTAGTATTCAGCTTACAGTGACATTTAAAGGCTTAACTAGGTTAATTAGGTTAAAAAATGAAAAAATAAAATAAAATTTGCGGCATTAAACATCACATGGGAAATGTCTGAAAAAGAATAAAGATTTAACAGGGGGGTGAATAATTTTGCCCTCATGTTTATATAGTATAATGATTGCTACCTTTTTTGCTTCTTATGTATTGTGATATACGTTTCAGCAATTAATCGCAACAAGTAAATATTAAAAGTCTACATTTATCACGTGTGCAG
Seq C2 exon
TGCTCTCGCTCCTGTGGTGAAGGGCTCCAGACGCGAGAGTTGCGCTGCCTCACACCTGACAAGCAGCACAGCGCCACCTGCCATCCAGACGCCAGACCTGCACACCAGCAGCCCTGCAACACCATTCCCTGCAGTCCCTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063407:ENSDART00000092627:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(11.8=10.5)
A:
NA
C2:
PF0009014=TSP_1=PD(84.3=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]