MmuINT0011572 @ mm10
Intron Retention
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95677111-95677707:-
Coord C1 exon
chr3:95677528-95677707
Coord A exon
chr3:95677256-95677527
Coord C2 exon
chr3:95677111-95677255
Length
272 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GATGGCTGTGGTCTCCCCAGTGT
3' ss Score
7.13
Exon sequences
Seq C1 exon
TGTTCCTCGGAGTGTGGGTCTGGCACACAACACAGAGACATTATCTGTGTGTCCAAGCTGGGGGCCGAGTTCAATGTGACTTCTCCCAGCAACTGTTCCCACCTACCCAGGCCGCCTGCCCTGCAGCCCTGTCAGGGGCAGGCCTGTGAGGACAAATGGTTCTCCACTCTCTGGAGTCCG
Seq A exon
GTGAGTGCCTGGCACCCGTGCCTTGCTCTCCTTGGGCCTCTAACAAAGAGGCCTGCACTCAGCCAAGCCTCTCTCGGCCCAGGACAACCCAGTCGACCTTTTGTGTTGTCCCACTTCCCAAAGACTTGCAGGACTGGGGGACCCTCTCCATTTGGGGTCTTATAATGTTCCTGGAGAATGTTCTACCACAGTCTCTCAGAGAGGAAGTGGGTGGCCTGGGGAGCAGCCCTGAGAACGTTAGACATCTGATCAGATGGCTGTGGTCTCCCCAG
Seq C2 exon
TGTTCTCGATCCTGCCAGGGAGGCATGCAGACGAGGGAAGTCCAGTGCCTGAGTGGCAACCAGACTCTCAGCTCCCGATGCCCTCCTCACCTGAGACCTTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCAACCAGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850:ENSMUST00000117782:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(85.7=80.0),PF0009014=TSP_1=PU(11.8=10.0)
A:
NA
C2:
PF0009014=TSP_1=PD(84.3=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCACACAACACAGAGACA
R:
GGTTGCAGGGTTGGCTGTT
Band lengths:
297-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types