Special

DreINT0002588 @ danRer10

Intron Retention

Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39200458-39200814:-
Coord C1 exon
chr7:39200739-39200814
Coord A exon
chr7:39200637-39200738
Coord C2 exon
chr7:39200458-39200636
Length
102 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TTGTGTATGTGTGGTTGTAGTAA
3' ss Score
4.08
Exon sequences
Seq C1 exon
GGGCAAAGCATGCAGTTAGACAGAGCATTTCTGTCTGATCCAGAAAACATTTGTGCTTGTAAACGATTTATATGCG
Seq A exon
GTAAGAACTCACCTATGTCTAAAATGTTTTGAAAAACCAACACTTATACATACATTACATACATTATAACCTTTTTATTTTATTGTGTATGTGTGGTTGTAG
Seq C2 exon
TAAGAGAGGCTGTATGTGTGGATGGGGAGCGTGGAGTGATGCGGCCGGGACAGACACTGGTCGAGCACCGGGATCAGGGTGTGTGTTACGCCACACAGTGCACACACACACTAGACTCAGCCACTGGTTTCTACGTCCTCAGATCCACTGGCACTAACTGCACTGCACGCTGCCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460:ENSDART00000083804:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGCAGTTAGACAGAGCA
R:
CAGCGTGCAGTGCAGTTAGT
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]