Special

DreINT0002589 @ danRer10

Intron Retention

Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39200272-39200636:-
Coord C1 exon
chr7:39200458-39200636
Coord A exon
chr7:39200377-39200457
Coord C2 exon
chr7:39200272-39200376
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTGTGCTATCTATCCAACAGAAC
3' ss Score
8.98
Exon sequences
Seq C1 exon
TAAGAGAGGCTGTATGTGTGGATGGGGAGCGTGGAGTGATGCGGCCGGGACAGACACTGGTCGAGCACCGGGATCAGGGTGTGTGTTACGCCACACAGTGCACACACACACTAGACTCAGCCACTGGTTTCTACGTCCTCAGATCCACTGGCACTAACTGCACTGCACGCTGCCAGCCT
Seq A exon
GTGAGTATAACACATGAACAAAGACACTCAGAAGTCAAGCACAAAACACCTACTAACTTAACTGTGCTATCTATCCAACAG
Seq C2 exon
AACCAGATATATATCCCACCTAAAGACCCCAGCAGCTGCTGTGGCACGTGCAAAAATATTTCTTGTCTGCTCCGGAATGAGAATGGATCTGTAGCCATGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460:ENSDART00000083804:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCAGGGTGTGTGTTACGC
R:
TATTTTTGCACGTGCCACAGC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]