BtaINT0106276 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35418044-35419048:-
Coord C1 exon
chr15:35418870-35419048
Coord A exon
chr15:35418149-35418869
Coord C2 exon
chr15:35418044-35418148
Length
721 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGG
5' ss Score
6.22
3' ss Seq
CGTCCCGCCCCGTCCTACAGAAC
3' ss Score
9.49
Exon sequences
Seq C1 exon
TGAAGGCCCCCGTGTGTCTGAGTCGCGAGCTGGGGGTGATGCAGCCGGGCCAGACGGTGGTGGAGCTCTCGGCAGATGGTGTGTGCCACACCTCCCGCTGCACTGACGTGCTCGACCCTCTGACCAGCTTCTACCAGATCAACACCACCTCCGTGCTGTGTGACGTCCACTGTGAGGCG
Seq A exon
GTAGGGGGAGGGGGCTGGGGGCCCGGGGGGCTGGGTGTCTGTGGGGCCCTTCAAGCTCGCCCAAGCTCTTTGGACGAGTCTAGAGGGTGGGCATGGCGGGGGACCTCCAAGACCCCCTGTGCAAAGTGCCGAAGCCAGAGGGGAATAGCAAGAGTGCAGGCCTGGCGAGGGTGGACATTTGACAGAGAAAATACACATTTATTAAGCACCTACTTGTGCCTGGCACATTCCCTGTCATCTTGGTTTGTGTCTTTGTATTGCTACCATTTGTTGAGTGCTTCTATATGCCCAGTACCTAGGACAGCAACTGGCTTCTAGTAAGGCCTGGATCAGAATTAGTCGAGCAAAAGATGATGAAATTATTCCCATTTTTCAGATGAGAAAACTGAAGTTTAGGGAGGTCCAGCTGTTTGTCAACATTTCCCCAGGAACTGGGACCCAAACGAAAGTTTATCTGGAATGAATACTGGCACCCTTAATTAGCAGCCATGCCGTCTCTTGGTCCACTGGGGCTGAGTCAAGGAAGGGCTGTAAGGGAGGTTCAGGGTACATAACGACGGCCTTCCTACTCAACATTGAAAGAGGCTAGGGGTTTCCTTCCCAGCCATCTCCAGCGCCCCTCCTCTGGTTTCTGGGCTCAGGGACAAGCAGAGAGTGGGAGCGCAGGAGGGTGGAGGTGGGCCCCAGGGCTGAGCCCATCGCGTCCCGCCCCGTCCTACAG
Seq C2 exon
AACCAGGAGTACGAGCACCCGAGGGACCTGGCAGCCTGCTGCGGCTCCTGCAGGAACGTGTCCTGCCTCTTCACCTTCCCCAACGGCACCACCTCCCTGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987:ENSBTAT00000064728:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCGTGTGTCTGAGTCG
R:
CAAGAACAGGGAGGTGGTGC
Band lengths:
278-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development