GgaINT0055896 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:13176538-13178015:+
Coord C1 exon
chr5:13176538-13176716
Coord A exon
chr5:13176717-13177910
Coord C2 exon
chr5:13177911-13178015
Length
1194 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
TAATCTGTTTATTTTGGCAGAAC
3' ss Score
5.79
Exon sequences
Seq C1 exon
TGAGAGACAAAGTTTGCTTGAGTAATGAGAGAGGCGTGCTGCTACCTGGACAGACAATTGTGGAACACAGTCTAGATGGCATTTGCCATATTTCTTACTGTACAAATGTGATTGATCCTTCCACTAAATACTACAGAATAAACACTTCTTCAGTAGCCTGTGCTGTCGAGTGCAAAGCT
Seq A exon
GTAAGAAATTTAGGATTTTAGACATGTATATTGTGACTGGTGATCTTAACTACTTTTTTTTTCCTTGAGTGGATTATAGTCATGAGAACAAGATGGAAAAAATAACTATAAGACCCCCTTCCCCACAGTGATTTACTACCTATCTTGGATAGAAGTTAATGGAATTCTCTCTCCCTTCACTATTTTCCCAGAATATAGATAATGTGTTTATGCTAACTTTGTTTCTGTATGTTGAATGTCATAAATTCATGCAGTGTTTTATTGTGTGATTTACTCTCTCCATAAATTACCCATTTTGATGGGTAATAAATACCATAAATGGATAAAATACCAGGTGGATTTGTCTGGCTGAGGCACAGAACGGATGCAATTAAGTCATTAATAACCGTACTATTGCTCCCTTTTAGAAAGACAGGTGGACCTTATTTGATCTTAATCTTCTTAAAACTGCAATTGTATTTAGGGAGAGTTGAGCACTAGCCTGATGGAGAGATGACTTGAAGGTTTGGATAGATTTATCCTCACTGAGAATACAGAAGGTGACAAGTTCTGTTACCATCTCATGTATTTGAACTAGCTACTGCAGAGATCCAATGCTCAGCAGGGTCCCATATAGAGCAGCAGTGGACTAAAGGACTGATAGCATACTGCCGCTGTGCATCTTTAGCTTTAGCTATGTTGTGCTGGCACAAATTGCCAGACTTAGAAGCCATTAGGTCAATAAGAACTGGGAAGAGAATAATAAGAAGAATTTCAAATGTGATGAAAACAGCTGCATTAAATATGGAAATGGTATCTTGGCTTTTTTTTTTTTTTTTACATATCATGATACGTAACTGTGGGAATATTATATGGGTTACATTTTAAATTATGTTTTTGTTTGTTGTCTAACGTGTAAAAAAGTAAAATTTCAATGGTTGTTGATGTAAGCTGTCAGACTAACATTTAAAAATTAGAGAGAGACCAGTTAATTCTCTGAGCTGGAGCTTCTTCCCATTTTGAATTAATGGCATTATATATTTTATAAAAGGTTCCCGAACGTATAGGGCATACAAACAGAAGCTGTGTGCTTTTGAAAGTTATTTAAAACCTGTCCCTAAGATAAAATACCCCTAAAAACTCTGCCCATTACCCTAGTAAAAAGTCAAGTTGCACAGTAGTTTCATACAAGGAATAATCTGTTTATTTTGGCAG
Seq C2 exon
AACCAAGTCTATCAACCTCCAAAGGATTTAACAACTTGCTGTGGTAGCTGTAAGAACATATCATGTCTCTACACTTTCAACAACGGTACAGTTTCCAATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208:ENSGALT00000010023:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGACAAAGTTTGCTTGAGT
R:
ATTGGAAACTGTACCGTTGTTGA
Band lengths:
278-1472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]