HsaINT0020311 @ hg19
Intron Retention
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80761341-80762089:+
Coord C1 exon
chr12:80761341-80761519
Coord A exon
chr12:80761520-80761984
Coord C2 exon
chr12:80761985-80762089
Length
465 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
TCTAATATCATTATATGCAGCAC
3' ss Score
4.15
Exon sequences
Seq C1 exon
AAAAGGATGATGTGTGTGTATTTCAAGAAGTATCAGTATTGAATCCTGGACAATCCATGATAAAGTATTTGGAAGAAGACTTTTGTTATGCTATAGAGTGTCTGGAAGAAAAAGATAACCATACGGGCTTTCACACTCTGAATTTTACACTGGTGAATTGTTCAAAAAAATGTGATGTT
Seq A exon
GTAAGTATTCCTTGTAATTTATTCTGGTGAGAGTTAATGCATTCAAAAATGGCAGAGTTATAGAATTTGAAATGGTGAATACTCCATTAGTTTAAAATATATATTATATAGTTCTTCAATAGTCTACTATTTTGTAATATATCAATAAAACACAGACTTTCACTTTCCTGTGCATAACCTTGAACTTCAGGAGTCTTATTATCTACAGCTTGCCAGGTTGCCTTACCTGAGGTTGTTAAACCTGCTTGATGAATTTGGCTGTTAGAAGTAAAGGTTAACATCTATCTCACTTCTAATATAACCATATAAAGTCAATTATTATTGGAAGCTTCTCATATTCAACCTTAGAAATCCTTACAGTTGTCTGGAAAGAGCTTGTAGTTATGTTTGGAAGAAATAACTCTCCAGAAGTAATTCATTAAAAATATTGATATGGTGTCGCTAATCTAATATCATTATATGCAG
Seq C2 exon
CACCAGGTATATACTCCATCCCCAAGTGATTATGGTTGTTGTGGTACCTGCAAAAATGTATCCTGCAAATTTCACATGGAAAATGGAACATCAGTTGTATACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-C12orf64:NM_173591:53
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGTGTGTGTATTTCAAGA
R:
CGCGTATACAACTGATGTTCCA
Band lengths:
281-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)