BtaINT0106333 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9947647-9948507:+
Coord C1 exon
chr5:9947647-9947825
Coord A exon
chr5:9947826-9948402
Coord C2 exon
chr5:9948403-9948507
Length
577 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ATTATTATTACTCTGCACAGCAC
3' ss Score
3.6
Exon sequences
Seq C1 exon
AAAAGGATGATGTGTGTGTATTTCAAGAAATATCAGTATTGAATCCTGGCCAATCTATGATAAGGTATTTGGAAGGGGATTTTTGTTACATGGTAGAGTGTCTCGAAGAAAAAGATAACCACACAGGCTTCCACACTTTGAACTTTACAATGGTGAATTGTTCAAAAGAATGTGATATT
Seq A exon
GTAAGTATTTTTTCTAAGTCATTCTGGTACAAGTTCATTAATCTTAAAATGGCAGCTGTAGAATTTGAACAATACTCTGTAATTTAAAAATATACACTTGAATAGTGCTTTAATAATCTATTAATTTGTAATGTATCTATATAATACAGTATCCTTTTCCTGGGTATAACCTTGAATTTCAGAAGTCTTATTTTCTATACAGCTTATTTGACCTGAGCTTTTTACATCTGCTTGATGAATCTTGTCTGCGAGATGTAAAGGTTAACAACTACTTCACTTCTAATACAGCTGTATAAAGTTATTTGATGTGCCTCAAATTCAACCTTAAATATATTTACAGATATTCTAAGAGAGCATAATTTTTAAAATTTATTTTTAACTGGAGGATAATCACTTTACAATGTTGTGTTGGTTTCTGTCATACATCAGCATGAATCAACCATAGTCTGCATGTGTCCTCTTCCTCTTGACCCTCCCTCTGAGAGCTTATGTTATAATGGGAAGCACTTTCAGAACTAATTCATTAAAAATATCAGTACTGTTGTTGGCTAATCCAAATTATTATTACTCTGCACAG
Seq C2 exon
CACCAGGTATATACTCCACCTCCAAGTGACTATGATTGTTGTGGTACCTGCAAAAATATATCCTGCAAATTTCAAATGGAAAACGGAACAACAGTTATATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336:ENSBTAT00000048210:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGATGATGTGTGTGTATTTCA
R:
TATAACTGTTGTTCCGTTTTCCATT
Band lengths:
278-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]