HsaINT0020311 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80367561-80368309:+
Coord C1 exon
chr12:80367561-80367739
Coord A exon
chr12:80367740-80368204
Coord C2 exon
chr12:80368205-80368309
Length
465 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
TCTAATATCATTATATGCAGCAC
3' ss Score
4.15
Exon sequences
Seq C1 exon
AAAAGGATGATGTGTGTGTATTTCAAGAAGTATCAGTATTGAATCCTGGACAATCCATGATAAAGTATTTGGAAGAAGACTTTTGTTATGCTATAGAGTGTCTGGAAGAAAAAGATAACCATACGGGCTTTCACACTCTGAATTTTACACTGGTGAATTGTTCAAAAAAATGTGATGTT
Seq A exon
GTAAGTATTCCTTGTAATTTATTCTGGTGAGAGTTAATGCATTCAAAAATGGCAGAGTTATAGAATTTGAAATGGTGAATACTCCATTAGTTTAAAATATATATTATATAGTTCTTCAATAGTCTACTATTTTGTAATATATCAATAAAACACAGACTTTCACTTTCCTGTGCATAACCTTGAACTTCAGGAGTCTTATTATCTACAGCTTGCCAGGTTGCCTTACCTGAGGTTGTTAAACCTGCTTGATGAATTTGGCTGTTAGAAGTAAAGGTTAACATCTATCTCACTTCTAATATAACCATATAAAGTCAATTATTATTGGAAGCTTCTCATATTCAACCTTAGAAATCCTTACAGTTGTCTGGAAAGAGCTTGTAGTTATGTTTGGAAGAAATAACTCTCCAGAAGTAATTCATTAAAAATATTGATATGGTGTCGCTAATCTAATATCATTATATGCAG
Seq C2 exon
CACCAGGTATATACTCCATCCCCAAGTGATTATGGTTGTTGTGGTACCTGCAAAAATGTATCCTGCAAATTTCACATGGAAAATGGAACATCAGTTGTATACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGTGTGTGTATTTCAAGA
R:
CGCGTATACAACTGATGTTCCA
Band lengths:
281-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development