RnoINT0106140 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51926876-51927596:+
Coord C1 exon
chr7:51926876-51927054
Coord A exon
chr7:51927055-51927491
Coord C2 exon
chr7:51927492-51927596
Length
437 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
TGCCCGTTTATTATATTCAGCAC
3' ss Score
5.55
Exon sequences
Seq C1 exon
AAAAGGATGATGTGTGTGTGTTTCAAGAAGTATCAGTGTTGAATCCTGGCCAATCTCTAATAAAGTATTTGGAAGAGGACTTTTGTTATGCAATCGAATGTCTGGATGAAAAAGATAACTATACAGACTTTCATACTTTGAATGTTACAATGGTGAACTGTTCCAAAGACTGTGATGTT
Seq A exon
GTAAGTATTCTTATAAGTTGCTCTAAAGATCCCGTGAGTTGAAATTTTTCAGTTAGAGAATTTGAACTTGTAAATAGTTTATGACTTCAACACTTGAGTATCTCCTTAACACTCTATTATTTTATGAGATGTGTATTTAATGCTGGCACTCACTTTACTCTGCACCCTTGAGTTTCCAGAGTTGTCACGTACAGTTTGGTTGACCTAAGATTGTTGCTCCTGCTTGATGAATGTTGACTGGTAGAGGTCAACACATCCTTCATTTCTAAGTTGGCTGTTTAAAGTAAATTATTGTTTGAAGTTCTTCATCTTGAGCTTCAGGAATGCTTACAGATAATCAGAGAGAGTATGTTAGGGTTGGAAACACCTTCAGGGCTAATGCACTAAAATGCTTGTATAGCTGTATGGCTAATACTATGCCCGTTTATTATATTCAG
Seq C2 exon
CACCAGATATACATCCCATCCTCCAGTGATTATGATTGCTGTGGGACATGTAAAAATATATCCTGCAAATTTCATATGGAAAATGGAACATCAGTTATATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGTGTGTGTGTTTCA
R:
ACTGATGTTCCATTTTCCATATGAA
Band lengths:
271-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]