MmuINT0071236 @ mm9
Intron Retention
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107207596-107208329:-
Coord C1 exon
chr10:107208151-107208329
Coord A exon
chr10:107207701-107208150
Coord C2 exon
chr10:107207596-107207700
Length
450 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TGCCTGTTTATTATATTCAGCAC
3' ss Score
5.54
Exon sequences
Seq C1 exon
AAAAGGATGATGTGTGTGTGTTCCAAGAAGTATCAGTATTGAATCCTGGGCAATCTCTAATAAAGTATTTAGAAGAGGAATTTTGTTATATAATCGAATGTCTGGATGAAAAAGATAACTATACCGACTTTCATACTTTGAATGTTACAATGGTGAACTGTTCAAAAGACTGTGATGCT
Seq A exon
GTAAGTATTGTTTTAAGTTGCTCTGGAGACCTGGGGAGTTGAAATTTTTCAGCTAGAGAATTTGAACTTTGTAAATACTTTATGACTCCAACACTTGACTATCTCCTTAGCACTCAATTATTTTATGAGCTGTGTATTTAAGGCAGACACTCACTTCACTATGAGTGACCTTGAGTTTCCAGAGTTGTCATGTACAGCTTTCTTGTTTGGTTGACCTAAGATTGTTGTGTCTGCTTGATGAATGCCGACTGGTAGAGGCTAACCTGTACTATATTTCTAACATGGCTATTTAAAGTAAATTAGTGTTTGTAGTTCTTCATCTTGAACTTCAGGAATGCTTACAGATGTTCAGAGAGAGAACACACTGGAGTTGGAAAACACTTTCAGGACTAGCACATTAAAATGCTTATGTTGCTGTATGCTAATAATATGCCTGTTTATTATATTCAG
Seq C2 exon
CACCAGATATACATTCCATCCTCCAGTGATTATGATTGCTGTGGAACATGTAAAAATATATCCTGCAAATTTATTATGGAAAATGGAACATCAGTTATATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-Gm6924:NM_001177567:53
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGTGTGTGTGTTCCA
R:
CCATTTTCCATAATAAATTTGCAGGA
Band lengths:
262-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: