DreINT0003300 @ danRer10
Intron Retention
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3647825-3650235:+
Coord C1 exon
chr21:3647825-3647914
Coord A exon
chr21:3647915-3650185
Coord C2 exon
chr21:3650186-3650235
Length
2271 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TATTTCTGTATTGTGTGCAGATA
3' ss Score
7.91
Exon sequences
Seq C1 exon
GAGCGTTGAAGGAGAGTTTAAAGGTGTGGGTAAGAAAGGCCAGTCCTGTGTCCAGCTGGCACGCATCCTGCAGTACCTCGAGTGTCCACA
Seq A exon
GTGAGTGCCGCCACCATTCAGTTTAATTCAATTCATCTTCATTTCTATAGCGCTTTTACAATGTAGATCGTGTCAAAGCAGCTGAACATAGAAGTTCTAGTAGATTGAAACTGCTTCAGTCCAGTTTTCAGAGTTGAAGTTTAGTTTAGTTCAGTTTAGTGTGGTTTAATTTTCACTGTTGAGAGTCCAAACACTGAAGAGCTAATCCACCGATGCGCAGCTTCACAAGTCTCAAACCAAGCAAGCCAGTGACGAGAAACAAACTTCACCAATTGATGAAAGTGAAGGAAAAAATCTCAAAGTCACCATTACACTTCTGGTATCTTAAAGGGACAGTTCTGCCTTCATCTCATCCTCTACTTGTTTTAATCCTGTTTGATTTTCTTTCTTCTGTTAAACACAAATATATATACTGAAGATATACTAGAAAAAACAGCCATTGACATGCATAATGTTTTCTTTTCTACTATGGATGTCCTCAACATTCTTCAGAATATCTTGTTTTGTGATCAACAGAAGAAAGAAATATATTAAGTTTACAACCACTTAAGTGTTAGTAAATAACGAGGACCGGGCTCGAAATTGCGCCTGAAATTTTATCTATGCGACCTCAAAATATATTTGGGAGCATTTGTGCGAGTGTATAAAATTGTTGTGAGCGACCAGTTTTTACGGCAAAATGTTCACCACATGCGCGGATTCAGGAGACATTCAGGCAGAATGCATCTCTAAGCTCTTTGTCTGGACTTAAAATGCGAAACGCAGCGCTCAGGAATGGTTTAAAACAGTTGTCATGTTAACTTGCTGCAGTAAACAAAGCCAAGTCTGTAATGCTTGCCCCGCCTCCGCGCTCTTCTCATTGGCCCACTGCTCTAGCACTGAAATATCAGCTGTCAATCACTCAGTCAATGCCTTCTGACTTGGGATGACAGAGAGAGCTACTACCATAAAAAATTTAAAGCGCTGAAGATGAGAATGAAGATAACACTGACAGATTTAGTTTTAGAAACCATGGCATCTAAAGTTACAAATAATGACACATCTTACTAGTGATCATGTGCTGAATCTTAATCCACCATCTACACTTTTTCAAGAGTGGATAAAAGACTTCCGTTGGCTTACAGTCCGCTATGAAAAGTCTGTGGGATGGAATTTTCAGGTAACTGTTTGCCACATCTAGCACGAGAGCTTCTGTTTAATCCTTCATATAATCGCCAGATGCTGTCCGCCATGCAAGTGGCAGCTATGTCAAATTTAACATGTACATCATCGCAAACGGGTTTGCACTGATTAAACTAACATCACTACTCATAAAAAGACTGGTATTGCTATGAACATGACGTATGCATATAATAGGGTACAGTATATGTCAAAAGCATCAGTGCAATATCAGACAGCACCCGTGAGAACAGCACAGTTATACCGTTAACTGATTCATTCATTTCAAGCAGTGTGTGCAGGGCCGGTGAGCGCTCCGTGTATGCTTTGGTCAGTTATGTTATAAAAATCTATTTTCTTGTGATAACGGGATTTCGTTGAGACATATTTTCCTTACGCTGGCATGAATATAATTTTTGCTTGTTAATTTGATTACTGTTGATTTCAAATGCAATAAATATGTTTGTATAAAACTTGTAGTAACGTTACTTATAATTGGTGGGTGCGACTAAAATTTGGCTGATGTGCCTACATTTTTAAAGTTAGGAACAGCGGTATTACCAAGCAAAAAGGTTCATTTTGAGCCCTGGAGGATATTTAAATTTCTCTGTGAACAATCATTTTAAAGGGGGCTTGAATTGAGAAACCAAAATTCCCTTGTCCCTTTGAGGTATAAGAGTTTACAGTATTATAAAAACAACCTGTGAGTTTCAGAACTCAACACTTTGTTATTCCTCTAAAATCATCTGATATTAAAGGCAGAATGACAAAATGACAGGTTCTGGAATGTTCTACTCTGTGATGTAATAGAATGGATAAGCTCCGCCTCCATAAATGATTGGAACCTACTTTAACTTTACCTGTCTGTTTAGCCCTGTTAATATGCAAAACTGTCAGCCAATCAGAACAGTGGGCGTTTACTTCTGAGACTACAATTGGCCACGCCCATCCAAACAGACCATACTAATGAAAACCAGCACAGAAAACAGCCAATTACTTATAAATGATGATGTTTTGTGATTTAAACATTATAACTGGACCCCAGATAACAGTACTAATTAAAAGACTGAGGTAGTTCTTGACCCCTATAATATATTTCTGTATTGTGTGCAG
Seq C2 exon
ATATCTACGGAAATTCTTCTTCCCGAAGCATCAGGATCTGCAGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707:ENSDART00000146754:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(12.1=100),PF0259812=Methyltrn_RNA_3=FE(6.1=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]