GgaINT1007657 @ galGal4
Intron Retention
Gene
ENSGALG00000004622 | C17H9ORF114
Description
uncharacterized protein LOC417203 [Source:RefSeq peptide;Acc:NP_001264604]
Coordinates
chr17:5282426-5282862:-
Coord C1 exon
chr17:5282773-5282862
Coord A exon
chr17:5282476-5282772
Coord C2 exon
chr17:5282426-5282475
Length
297 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGAACCTTCTCTAATAACAGGTA
3' ss Score
7.88
Exon sequences
Seq C1 exon
GAGCGTGGAAGGGGAATTTGAAGGAATTGGGAAGAGAGGCAAGGCTTGTGTGCAGCTGGCTCGGATACTGCAGTACTTGGAGTGCCCTCA
Seq A exon
GTAAGTCCACCGTGATCAGATTGAATATCTTATTAGTGGCAGAACTAAAATGATAGCAACTGATGATTTGCATGCATCTCTCATGCTGGAGGCTCTGGGAGCAGGAGATAAATTGTGTGTGTGTTCCATGATTTGCAGGAACACAGGATCTGATTACTTCACGTGTGGTTCAGTTTAACTGAAAGAACAGGAGGGACTTGGGGGAACTAAGCATGGTTTTCTCTGTTCTTGACTTCTTTTGAAATAGTACAAAGCTTGAACTGACAATTTTTACATTTGAACCTTCTCTAATAACAG
Seq C2 exon
GTACTTGAGGAAATCATTTTTTCCAAAACATGGGGATCTGCAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622:ENSGALT00000007359:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTGGAAGGGGAATTTGA
R:
GCAAACTGCAGATCCCCATGT
Band lengths:
138-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]