GgaEX0006265 @ galGal4
Exon Skipping
Gene
ENSGALG00000004622 | C17H9ORF114
Description
uncharacterized protein LOC417203 [Source:RefSeq peptide;Acc:NP_001264604]
Coordinates
chr17:5278740-5283582:-
Coord C1 exon
chr17:5283423-5283582
Coord A exon
chr17:5282426-5282475
Coord C2 exon
chr17:5278740-5278816
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGAACCTTCTCTAATAACAGGTA
3' ss Score
7.88
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GGCGGCACTACACGCTGAGCGTGGCCCTGCCGGGCTCCATCCTGAACAACGCGCAGTCGCTGGAGCTGCGGACGTACCTGGCCGGGCAGATCGCTCGAGCGTGTGCCATCTTCTGCGTGGATGAGATCGTGGTGTTCGACGAGCATGGAGAAGATGCAAA
Seq A exon
GTACTTGAGGAAATCATTTTTTCCAAAACATGGGGATCTGCAGTTTGCAG
Seq C2 exon
CTGGATTTGGTTGGTCAGAGATCAATGCTTGTTTCCAGCTGTGATGGCTTTCAAGCTGCTTGTTCTCTTCAAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622_MULTIEX1-2/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF093445=Cas_CT1975=PD(38.4=79.6),PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
A:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCTTCTGCGTGGATGAG
R:
ACATCTTGAAGAGAACAAGCAGCT
Band lengths:
133-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]