RnoEX6016274 @ rn6
Exon Skipping
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8747385-8747884:-
Coord C1 exon
chr3:8747795-8747884
Coord A exon
chr3:8747657-8747706
Coord C2 exon
chr3:8747385-8747515
Length
50 bp
Sequences
Splice sites
3' ss Seq
ACAGCTGCATTCCTGCCTAGGTA
3' ss Score
6.58
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GAGTGTGGAGGGAGAATTCAGGGGCGTTGGCAAGAAGGGGCAGGCATGTGTCCAGCTGGCCCGCATCCTGCAGTACCTGGAGTGTCCACA
Seq A exon
GTATCTGAGGAAAGCGTTCTTCCCCAAGCACCAGGATCTGCAGTTTGCAG
Seq C2 exon
GAATCCTCAACCCGTTGGACAGCCCTCACCACATGCGTCAGGATGAAGAATCTGAGTTCAGAGAAGGCGTCGTGGTGGACCGGCCCACCAAGGCTGGCCACGGCTCTTTGGTCAACTGTGGAATGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.409
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
A:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGGGAGAATTCAGGGG
R:
TTCATCCTGACGCATGTGGTG
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]