GgaEX0006265 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5910242-5911044:-
Coord C1 exon
chr17:5910955-5911044
Coord A exon
chr17:5910608-5910657
Coord C2 exon
chr17:5910242-5910372
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGAACCTTCTCTAATAACAGGTA
3' ss Score
7.88
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GAGCGTGGAAGGGGAATTTGAAGGAATTGGGAAGAGAGGCAAGGCTTGTGTGCAGCTGGCTCGGATACTGCAGTACTTGGAGTGCCCTCA
Seq A exon
GTACTTGAGGAAATCATTTTTTCCAAAACATGGGGATCTGCAGTTTGCAG
Seq C2 exon
GGCTCCTCAACCCACTGGACAGCCCCCACCACATGCGGGTGGATGAGGATTCTGAGTACCGAGAAGGTGTGGTGTTAGATCGGCCAAGCAAGCCAGGCAGAGGCTCATTTGTCAACTGTGGGATGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=0.205
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
A:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGGCAAGGCTTGTGTG
R:
ACACCACACCTTCTCGGTACT
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]