HsaEX1038803 @ hg38
Exon Skipping
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128822002-128826629:-
Coord C1 exon
chr9:128826540-128826629
Coord A exon
chr9:128826384-128826433
Coord C2 exon
chr9:128822002-128822263
Length
50 bp
Sequences
Splice sites
3' ss Seq
AGGTCAGCATTCTTTCCTAGGTA
3' ss Score
4.26
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GACTGTGGAGGGGGAATTCACAGGAGTTGGGAAGAAGGGGCAGGCGTGCGTACAGCTGGCCCGGATCCTGCAGTACCTGGAGTGTCCACA
Seq A exon
GTACCTGAGGAAGGCGTTCTTCCCCAAGCACCAGGATCTACAGTTTGCAG
Seq C2 exon
GCAGCCTTCCCTGATCTGTCCTCTAACTTCTGTCAACCTGCAGGACCACGCCCTCACTGTGAGACTTCTGTAGCCTGCCTGGCTCCTCCTTGAGGCTGGAACTCTCTCCAGGGTGGTTAACTCTTTCCCTCTGTTTTCCTTATGCCCAACACTGGGTCAGGCAGAGTGGGCGACAATAAACGCTGCTAGGAGAATCGAGCCTTCTGAATATTCACATTCGTCTGAGGGGAGACTTAACGACTGTCCATCTCTCCCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917_MULTIEX1-4/12=3-11
Average complexity
C2
Mappability confidence:
94%=100=94%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
A:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGCAGTACCTGGAGT
R:
AACCACCCTGGAGAGAGTTCC
Band lengths:
146-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains