HsaINT1012547 @ hg38
Intron Retention
Gene
ENSG00000167136 | ENDOG
Description
endonuclease G [Source:HGNC Symbol;Acc:HGNC:3346]
Coordinates
chr9:128820739-128822677:+
Coord C1 exon
chr9:128820739-128820848
Coord A exon
chr9:128820849-128822327
Coord C2 exon
chr9:128822328-128822677
Length
1479 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTGCCTGGGTCTGCCCACAGGAC
3' ss Score
9.76
Exon sequences
Seq C1 exon
GTGCCCCACCTCAACCAGAATGCCTGGAACAACCTGGAGAAATATAGCCGCAGCTTGACCCGCAGCTACCAAAACGTCTATGTCTGCACAGGGCCACTCTTCCTGCCCAG
Seq A exon
GTAAGGTGGAAACCAGGGGGGCGGCAGAACCTCCCACTCACCTGAGGCCCCTACTGCCACTCACAGGGCCAGGCTTGCCCCAGGCTCTGGGTCAATACCAGTTCCCTACTCATCTGGTTTCTTGGCAAGCCTGTCAGCTTCCCTGCCTCGAGTCCCCTCATTCCACCTCCACAGCCAAAGACCTGTCGGGTACCCCTGACCATCTCTCCTCTGCCCATGGGCAGCAGCAGGCCCTGAATCTGCCCCCGCTTCTCCCTGCTGTCACCTCTTGGCATGCCCACCCAATCTTGTTCTGCCAATATGGAACCCCCCGCAGGTCTGCAGTGCACCAAGCTCTCCCACCTTCCCCCCGCAGGTCTGCAGTGCACCAAGCTCTCCCGCCTTCCCCCTGCAGGTCTGCGGTGCACCAAGCTCTCCCACCTTCCCTCTGCAGGTCCGAGGTGCACCGAGCTCTCCCGCCTTCCCCATGCAGGTCCCCAGTGCACCGAGCTCTCACGCCTTCCCCATGCAGGTCCCCAGTGCACCGAGCTCTCCCGCCTTCCCCATGCAGGTCCCCAGTGCACCGAGCTCTCATGCCTTCCCCCTGCAGGTCCGCGGTGCACCAGGCTCTCCCGCCTTCAGTCTCTGCTCTGCTTGGAGCACTTCCCTCCACCCTTCTCGGGAGTTTGAATCTAGATCTGCCTGACCCAGGGCCTCCACTCTTGCTCCTGTGCAGCCCTGCCTCTCAGGTGGAAGCAACTGAGCACCTCTGGGTGTGCTCCGTGGTTTTTCTGGCCTGCAGAGGGCTGGGGCTGAGAGGCAACAGGTCCAGGCTGAGCAGCTCACTCTGGAATCCACAGGCTCGGGATGGAGTCCAGGCCTCATCACCTAGTTCCTTGGTGCTGTGGGCAAATGACCTGTGTCCCCCTCTGCAAAACCTGTGACCTCTTGGTTGATGTCACATGCTTCCCCAGGGCCTGGTCCATGGTAAGGGCTCGGCATAGGCTGGCCAAGGCGGTGGTTGGGGCACTGATCAAATTTCATTAGCAGGTGCCTCCTAGGGCCTGGTGGAAGGGAGGAGACTCTGCTGAGGGGGAGCCCCCGTCCGGTGTCCTGGCACCTGTGCTGGTGCTGGGATATCACCTGTCATGGTCCTTGCCCACTTGTTGCTCACCTCTGTGGGGAGAGATGGACAGTCGTTAAGTCTCCCCTCAGACGAATGTGAATATTCAGAAGGCTCGATTCTCCTAGCAGCGTTTATTGTCGCCCACTCTGCCTGACCCAGTGTTGGGCATAAGGAAAACAGAGGGAAAGAGTTAACCACCCTGGAGAGAGTTCCAGCCTCAAGGAGGAGCCAGGCAGGCTACAGAAGTCTCACAGTGAGGGCGTGGTCCTGCAGGTTGACAGAAGTTAGAGGACAGATCAGGGAAGGCTGCCTGGAAGAGGTGGCTTTGGGTTCATCCAGGCCCCCTGCCCACGTGTGCCTGGGTCTGCCCACAG
Seq C2 exon
GACAGAGGCTGATGGGAAATCCTACGTAAAGTACCAGGTCATCGGCAAGAACCACGTGGCAGTGCCCACACACTTCTTCAAGGTGCTGATCCTGGAGGCAGCAGGTGGGCAAATTGAGCTCCGCACCTACGTGATGCCCAACGCACCTGTGGATGAGGCCATCCCACTGGAGCGCTTCCTGGTGCCCATCGAGAGCATTGAGCGGGCTTCGGGGCTGCTCTTTGTGCCAAACATCCTGGCGCGGGCAGGCAGCCTCAAGGCCATCACGGCGGGCAGTAAGTGAGGGTGGAGCCCAGTGAGACTGTGGGTGTGTGCAGGCCGGGGAGTATTAAAGGTGGTGATTTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167136:ENST00000372642:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0122318=Endonuclease_NS=FE(17.2=100)
A:
NA
C2:
PF0122318=Endonuclease_NS=PD(38.8=85.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACCCGCAGCTACCAAAA
R:
CTCCACCCTCACTTACTGCCC
Band lengths:
348-1827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains