HsaEX1038804 @ hg38
Exon Skipping
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128822002-128824869:-
Coord C1 exon
chr9:128824771-128824869
Coord A exon
chr9:128824072-128824174
Coord C2 exon
chr9:128822002-128822263
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGAGCTGGCCCCACCCCCAGGTG
3' ss Score
7.85
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACTGCAAGACCTACCATGGCAAAGTGGTATCATCGCAGGACCCTCGCACCAAAGCTGGTCTCTACTGGGGCTACACCGTCCGACTGGCTTCCTGCCTCA
Seq A exon
GTGCTGTGTTTGCTGAGGCCCCCTTCCAAGATGGGTATGACCTGACCATCGGGACGTCAGAGCGCGGCTCAGATGTGGCCTCTGCCCAGCTTCCCAACTTCAG
Seq C2 exon
GCAGCCTTCCCTGATCTGTCCTCTAACTTCTGTCAACCTGCAGGACCACGCCCTCACTGTGAGACTTCTGTAGCCTGCCTGGCTCCTCCTTGAGGCTGGAACTCTCTCCAGGGTGGTTAACTCTTTCCCTCTGTTTTCCTTATGCCCAACACTGGGTCAGGCAGAGTGGGCGACAATAAACGCTGCTAGGAGAATCGAGCCTTCTGAATATTCACATTCGTCTGAGGGGAGACTTAACGACTGTCCATCTCTCCCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917_MULTIEX1-8/12=7-11
Average complexity
C3
Mappability confidence:
90%=100=90%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.229 C2=NA
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PU(24.6=94.4)
A:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATCATCGCAGGACCCTC
R:
TTTATTGTCGCCCACTCTGCC
Band lengths:
255-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains