HsaEX1038802 @ hg38
Exon Skipping
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128822002-128827191:-
Coord C1 exon
chr9:128827032-128827191
Coord A exon
chr9:128826540-128826629
Coord C2 exon
chr9:128822002-128822263
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTCTCTCTCTCCAGGAC
3' ss Score
13.24
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GGCGGCCCTACACACTGAGCGTAGCCCTGCCGGGCTCCATCCTGGACAATGCTCAGTCGCCGGAGCTTCGCACCTACTTGGCCGGTCAGATTGCCAGAGCCTGTGCCATCTTCTGTGTGGATGAGATCGTGGTGTTTGATGAGGAGGGCCAGGATGCCAA
Seq A exon
GACTGTGGAGGGGGAATTCACAGGAGTTGGGAAGAAGGGGCAGGCGTGCGTACAGCTGGCCCGGATCCTGCAGTACCTGGAGTGTCCACA
Seq C2 exon
GCAGCCTTCCCTGATCTGTCCTCTAACTTCTGTCAACCTGCAGGACCACGCCCTCACTGTGAGACTTCTGTAGCCTGCCTGGCTCCTCCTTGAGGCTGGAACTCTCTCCAGGGTGGTTAACTCTTTCCCTCTGTTTTCCTTATGCCCAACACTGGGTCAGGCAGAGTGGGCGACAATAAACGCTGCTAGGAGAATCGAGCCTTCTGAATATTCACATTCGTCTGAGGGGAGACTTAACGACTGTCCATCTCTCCCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917_MULTIEX1-3/12=2-11
Average complexity
C3
Mappability confidence:
94%=100=94%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=NA
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
A:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATCCTGGACAATGCTC
R:
GGTCCTGCAGGTTGACAGAAG
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains