HsaEX6063352 @ hg38
Exon Skipping
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128824977-128829155:-
Coord C1 exon
chr9:128829110-128829155
Coord A exon
chr9:128828735-128828860
Coord C2 exon
chr9:128824977-128825049
Length
126 bp
Sequences
Splice sites
3' ss Seq
TAGGATGTTCTTTTATCCAGAGA
3' ss Score
4.44
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGTGAACACGGCCAAAGGATTGAGTGGCGAAAATGGAAGCAACAGA
Seq A exon
AGAAAGAGGAGAAAAAAAAATGGAAGGATCTCAAGCTGATGAAAAAACTGGAGCGGCAGCGGGCACAGGAGGAACAGGCAAAGCGCCTGGAAGAGGAGGAGGCAGCGGCAGAGAAGGAGGACCGCG
Seq C2 exon
GAGGTGAAGATTGACAAGAACCTGGAGCCCGGGCTTCGGGTGACTGTGCGACTGAACCAGCAGCAGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917_MULTIEX1-1/12=C1-6
Average complexity
C2*
Mappability confidence:
95%=100=95%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.465 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACACGGCCAAAGGATT
R:
GTGCTGCTGCTGGTTCAGTC
Band lengths:
115-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains