HsaALTA0001378-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128828735-128829155:-
Coord C1 exon
chr9:128829110-128829155
Coord A exon
chr9:128828850-128828877
Coord C2 exon
chr9:128828735-128828849
Length
28 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTGTCTCCTTGGCCAATTAGGAT
3' ss Score
7.74
Exon sequences
Seq C1 exon
GGTGAACACGGCCAAAGGATTGAGTGGCGAAAATGGAAGCAACAGA
Seq A exon
GATGTTCTTTTATCCAGAGAAAGAGGAG
Seq C2 exon
AAAAAAAAATGGAAGGATCTCAAGCTGATGAAAAAACTGGAGCGGCAGCGGGCACAGGAGGAACAGGCAAAGCGCCTGGAAGAGGAGGAGGCAGCGGCAGAGAAGGAGGACCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917-1-4,1-3,1-2,1-1-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGCCAAAGGATTGAGTG
R:
CTTTGCCTGTTCCTCCTGTGC
Band lengths:
113-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains