HsaEX6063352 @ hg19
Exon Skipping
Gene
ENSG00000198917 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:26933]
Coordinates
chr9:131589311-131591434:-
Coord C1 exon
chr9:131591389-131591434
Coord A exon
chr9:131591014-131591139
Coord C2 exon
chr9:131589311-131589470
Length
126 bp
Sequences
Splice sites
3' ss Seq
TAGGATGTTCTTTTATCCAGAGA
3' ss Score
4.44
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGTGAACACGGCCAAAGGATTGAGTGGCGAAAATGGAAGCAACAGA
Seq A exon
AGAAAGAGGAGAAAAAAAAATGGAAGGATCTCAAGCTGATGAAAAAACTGGAGCGGCAGCGGGCACAGGAGGAACAGGCAAAGCGCCTGGAAGAGGAGGAGGCAGCGGCAGAGAAGGAGGACCGCG
Seq C2 exon
GGCGGCCCTACACACTGAGCGTAGCCCTGCCGGGCTCCATCCTGGACAATGCTCAGTCGCCGGAGCTTCGCACCTACTTGGCCGGTCAGATTGCCAGAGCCTGTGCCATCTTCTGTGTGGATGAGATCGTGGTGTTTGATGAGGAGGGCCAGGATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917-'1-5,'1-2,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.674 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACACGGCCAAAGGATT
R:
CATCCTGGCCCTCCTCATCAA
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)