DreEX6082807 @ danRer10
Exon Skipping
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3645472-3647157:+
Coord C1 exon
chr21:3645472-3645511
Coord A exon
chr21:3646066-3646185
Coord C2 exon
chr21:3646998-3647157
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTGTATTTCTTTCACCTAGAGA
3' ss Score
7.24
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCGAAGAGAGAAAAAACTGGAAGAAATGGAAAGAACAAA
Seq A exon
AGAAAGAAGAGAAGCGGCGACGAAAAGAGACCAAACTCATCCAGCAGCTGGAGAAACAGAAGCTGAAGAAAGAGGAGGAAAATCAACAGCAGGTTAAACAGGAAGAGAAGGAAAGTAAAG
Seq C2 exon
GTCGTCTTTATACAGTGAGCGTGGCTCTGCCTGGATCAGTGATGGATAACGCTCAGTCTCCAGAGCTGCGGACGTATCTGGCTGGTCAGATCGCCCGAGCGTGTGCTGTTTTCTGTGTGGATGAGGTGGTCATTTTTGACGAGCTGGGAGAAGACGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707-'3-8,'3-6,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.772 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0259812=Methyltrn_RNA_3=PU(82.8=88.9),PF0259812=Methyltrn_RNA_3=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGGAAGAAATGGAAAGAACA
R:
TTTGCGTCTTCTCCCAGCTC
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]