MmuEX6100207 @ mm9
Exon Skipping
Gene
ENSMUSG00000039660 | D2Wsu81e
Description
DNA segment, Chr 2, Wayne State University 81, expressed [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30032843-30033485:-
Coord C1 exon
chr2:30033440-30033485
Coord A exon
chr2:30033113-30033241
Coord C2 exon
chr2:30032843-30033002
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCAATAATTCTCCAGAAA
3' ss Score
7.07
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGTGAACATGGCCAAAGGGTTGAATGGCGAAAATGGAAACAGCAGA
Seq A exon
AAAAAGAGGAGAAAAAGAAGTGGAAGGACCTCAAGATAATGAAGAAACTGGAGCGGCAGCGTGCCCAAGAGGAAGAGGCTAAACGCCAGGAAGAGGAGGAAGAGGCGGCGGCCCAGAGGAGCAACCAAG
Seq C2 exon
GACGGCCTTACACTCTGAGTGTGGCCCTGCCAGGCTCCATCCTGGACAATGCCCAGTCACCTGAGCTCCGCACCTACCTGGCTGGCCAGATCGCCAGAGCCTGCACCATCTTCTGTGTGGATGAGATTGTGGTGTTCGATGAGGAGGGCCAAGATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=0.638 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACATGGCCAAAGGGTT
R:
TTGGTATCTTGGCCCTCCTCA
Band lengths:
206-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: