GgaEX0027594 @ galGal4
Exon Skipping
Gene
ENSGALG00000004622 | C17H9ORF114
Description
uncharacterized protein LOC417203 [Source:RefSeq peptide;Acc:NP_001264604]
Coordinates
chr17:5283423-5285213:-
Coord C1 exon
chr17:5284535-5285213
Coord A exon
chr17:5283675-5283800
Coord C2 exon
chr17:5283423-5283582
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGGCTTTGTGTCCGTGCCAGGGA
3' ss Score
6.41
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
TGAGCCTCCATATGCCATTCAGCTGCCATTCAGCACTTTTCCTCCACGTTTAAAGACTTTGCTCATCAATTCTGAGATGTGCACAGCGAGACACAACGGTAAGGATGGCTCCTGGGGTCTTTTCCATCACTCACTTTCAGGAGGCTGTATGGGATCACTGCCCCTCAGCAAGCTGATTCCCACAGTCCTGAAAGCTGTGAACCCAGAGATCTGAGGTTTGCTAAAATTAGCAATATTCCCTTTGGTTTTGGGAAGGTGAGCACAGGTTCAGTAACCGCCTGCCCTCAGGAAATAGGTCTTTAAATGGAGCTTGGCTACAGCCAAACTTTCCCTGTGCAGCTGCACATTGCACATAGTTGATGCCTGGCAGCGTCCTCTGGGCTGCAAAGCAGAACTGCAGCCTCTGATGGGTGCGTGCAGCTGGGAGGGAGGGCTGGGGCTGGTGGGACAACAGGAGCAGCATTGCAGCAGGTGGTTCTTGCATCATTCTTCATTTCAGT
Seq A exon
GGAAAGCAGAGAAGAAGAAATGGAAGGAGCTGAACCTGCTGAAGAAGCTGGAAAAGCAGCGGGTGCGGGAGCTGGCCGAGAAACAGGCTGAGGAGGAGCAGCAGCAGCAGGAGGAGGAGGACAAAG
Seq C2 exon
GGCGGCACTACACGCTGAGCGTGGCCCTGCCGGGCTCCATCCTGAACAACGCGCAGTCGCTGGAGCTGCGGACGTACCTGGCCGGGCAGATCGCTCGAGCGTGTGCCATCTTCTGCGTGGATGAGATCGTGGTGTTCGACGAGCATGGAGAAGATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.419 C2=0.056
Domain overlap (PFAM):
C1:
NA
A:
PF093445=Cas_CT1975=FE(37.5=100)
C2:
PF093445=Cas_CT1975=PD(38.4=79.6),PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTGCAGCCTCTGATGG
R:
CTCGTCGAACACCACGATCTC
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]