HsaEX6063354 @ hg38
Exon Skipping
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128822002-128826433:-
Coord C1 exon
chr9:128826384-128826433
Coord A exon
chr9:128826022-128826152
Coord C2 exon
chr9:128822002-128822263
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCCCGGCTCTGCCTCCACAGGGC
3' ss Score
10.84
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTACCTGAGGAAGGCGTTCTTCCCCAAGCACCAGGATCTACAGTTTGCAG
Seq A exon
GGCTCCTGAACCCCCTGGACAGCCCCCACCACATGCGTCAGGATGAGGAATCCGAGTTCCGAGAGGGCATCGTGGTGGATCGGCCCACCCGGCCAGGCCACGGCTCCTTTGTCAACTGTGGCATGAAAAAG
Seq C2 exon
GCAGCCTTCCCTGATCTGTCCTCTAACTTCTGTCAACCTGCAGGACCACGCCCTCACTGTGAGACTTCTGTAGCCTGCCTGGCTCCTCCTTGAGGCTGGAACTCTCTCCAGGGTGGTTAACTCTTTCCCTCTGTTTTCCTTATGCCCAACACTGGGTCAGGCAGAGTGGGCGACAATAAACGCTGCTAGGAGAATCGAGCCTTCTGAATATTCACATTCGTCTGAGGGGAGACTTAACGACTGTCCATCTCTCCCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917_MULTIEX1-5/12=4-11
Average complexity
C3
Mappability confidence:
93%=100=93%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.432 C2=NA
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
A:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGGATCTACAGTTTGCA
R:
AGTCTCCCCTCAGACGAATGT
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains