HsaEX0011599 @ hg38
Exon Skipping
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128822002-128825049:-
Coord C1 exon
chr9:128824977-128825049
Coord A exon
chr9:128824771-128824869
Coord C2 exon
chr9:128822002-128822263
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGACTCTGTTACCCCTCCAGACT
3' ss Score
6.48
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GAGGTGAAGATTGACAAGAACCTGGAGCCCGGGCTTCGGGTGACTGTGCGACTGAACCAGCAGCAGCACCCAG
Seq A exon
ACTGCAAGACCTACCATGGCAAAGTGGTATCATCGCAGGACCCTCGCACCAAAGCTGGTCTCTACTGGGGCTACACCGTCCGACTGGCTTCCTGCCTCA
Seq C2 exon
GCAGCCTTCCCTGATCTGTCCTCTAACTTCTGTCAACCTGCAGGACCACGCCCTCACTGTGAGACTTCTGTAGCCTGCCTGGCTCCTCCTTGAGGCTGGAACTCTCTCCAGGGTGGTTAACTCTTTCCCTCTGTTTTCCTTATGCCCAACACTGGGTCAGGCAGAGTGGGCGACAATAAACGCTGCTAGGAGAATCGAGCCTTCTGAATATTCACATTCGTCTGAGGGGAGACTTAACGACTGTCCATCTCTCCCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917_MULTIEX1-7/12=6-11
Average complexity
C2*
Mappability confidence:
91%=100=91%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.175 C2=NA
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACAAGAACCTGGAGCCC
R:
AACCACCCTGGAGAGAGTTCC
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development