DreEX6082804 @ danRer10
Exon Skipping
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3651907-3656924:+
Coord C1 exon
chr21:3651907-3651979
Coord A exon
chr21:3656128-3656226
Coord C2 exon
chr21:3656822-3656924
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATGTGTGTCTGTGTTTCAGATG
3' ss Score
12.1
5' ss Seq
TCAGTGCGT
5' ss Score
3.75
Exon sequences
Seq C1 exon
GAAGTTCAGATCGATAAACAGCTGAAAACGGGACTGAGAGTGACCGTACAGCTCAACGAGAGCCAAAACAAAG
Seq A exon
ATGGAAGAGTGTATAAAGGTGTGGTTGTTGCTCCTCACATCCCCAGGACTGAAGCTGGACTCTACTGGGGATACAGCGTCCGACTGGCCTCCTGTCTCA
Seq C2 exon
GCGCTGTGTTCTCTGAGTGTCCGTATAAAGAGGGTTATGATCTGACCATCGGGACCTCAGAGAAAGGACAGAACACAGATCATGTGACTCTCCCAGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707-'10-17,'10-14,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(20.9=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
C2:
PF0259812=Methyltrn_RNA_3=PD(33.9=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGATAAACAGCTGAAAACGGGA
R:
CTGAAGGCTGGGAGAGTCACA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]