RnoEX6016277 @ rn6
Exon Skipping
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8745654-8746504:-
Coord C1 exon
chr3:8746432-8746504
Coord A exon
chr3:8746239-8746337
Coord C2 exon
chr3:8745654-8745756
Length
99 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGTCCTATTCTCCAGAAT
3' ss Score
7.52
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GAAGTGAAGATTGATAAGAAACTGGACCCTGGACTTCGGGTGACCGTGCGGCTGAACCAGCAGCAGCTCCCAG
Seq A exon
AATGCAAGACGTACAAAGGAACAGTCGTGTCGTCACAGGACCCCCGCACCAAAGCTGGTCTCTACTGGGGCTACACTGTCCGGCTGGCCTCCTGCCTCA
Seq C2 exon
GTGCTGTGTTTGCCGAGGCTCCCTTCCAGGATGGGTATGACCTGACCATTGGGACATCAGAACGTGGCTCCAGCGTGGCCTCTACCCAGCTGCCCAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.029
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGATAAGAAACTGGACCCTGG
R:
GAAGTTGGGCAGCTGGGTAGA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]