MmuEX6100213 @ mm9
Exon Skipping
Gene
ENSMUSG00000039660 | D2Wsu81e
Description
DNA segment, Chr 2, Wayne State University 81, expressed [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30030707-30031511:-
Coord C1 exon
chr2:30031439-30031511
Coord A exon
chr2:30031234-30031332
Coord C2 exon
chr2:30030707-30030809
Length
99 bp
Sequences
Splice sites
3' ss Seq
TAGCCTGTTTTGTTTCCCAGAAT
3' ss Score
7.11
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GAGGTGAAGATTGACAAGAAACTGGACCCTGGACTTCGGGTGACCGTGCGACTGAACCAGCAGCAGCTCCCAG
Seq A exon
AATGCAAGACATACAAAGGAACAGTTGTGTCATCACAGGACCCCCGCACCAAAGCTGGTCTCTACTGGGGCTACACTGTCCGGCTGGCCTCTTGCCTCA
Seq C2 exon
GCGCTGTGTTTGCTGAGGCTCCCTTCCAGGATGGGTACGACCTGACCATTGGGACATCAGAACGTGGCTCCGACGTGGCCTCTGCCCAGCTGCCCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAAGATTGACAAGAAACTGGA
R:
CTGGGCAGCTGGGCAGAG
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: