HsaEX0011599 @ hg19
Exon Skipping
Gene
ENSG00000198917 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:26933]
Coordinates
chr9:131586351-131587328:-
Coord C1 exon
chr9:131587256-131587328
Coord A exon
chr9:131587050-131587148
Coord C2 exon
chr9:131586351-131586453
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGACTCTGTTACCCCTCCAGACT
3' ss Score
6.48
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GAGGTGAAGATTGACAAGAACCTGGAGCCCGGGCTTCGGGTGACTGTGCGACTGAACCAGCAGCAGCACCCAG
Seq A exon
ACTGCAAGACCTACCATGGCAAAGTGGTATCATCGCAGGACCCTCGCACCAAAGCTGGTCTCTACTGGGGCTACACCGTCCGACTGGCTTCCTGCCTCA
Seq C2 exon
GTGCTGTGTTTGCTGAGGCCCCCTTCCAAGATGGGTATGACCTGACCATCGGGACGTCAGAGCGCGGCTCAGATGTGGCCTCTGCCCAGCTTCCCAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917-'13-16,'13-14,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.191 C2=0.036
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACAAGAACCTGGAGCCC
R:
CTGAAGTTGGGAAGCTGGGC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)