GgaEX1011723 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5908517-5909817:-
Coord C1 exon
chr17:5909745-5909817
Coord A exon
chr17:5909291-5909389
Coord C2 exon
chr17:5908517-5908619
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGCTTCCCTTTCAGAAA
3' ss Score
11.33
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GAGGTACAGATTGACAAACAGCTGAAGCCTGGTCTGCGTGTCACTGTGCGCCTGCAGGAACCACAGAATCCAG
Seq A exon
AAACTAAAGTACGAAAAGGCACTGTGGTGTCTTCGCACCACCCTCGCACGGTGTCCGGTTTGTACTGGGGTTACAGCGTCCGCCTTGCCTCCTGCCTGA
Seq C2 exon
GCGCTGTCTTTTCAGAATGTCCGTTTAAGGAAGGCTATGATGTCTCTATTGGGACCTCAGAGCGGGGTAACTCCGTGGACCAGGTCACCCTCCCCTCCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=0.324 C2=0.029
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGACAAACAGCTGAAGCCT
R:
CTAAAGGAGGGGAGGGTGAC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]