BtaEX6046540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99319764-99320616:-
Coord C1 exon
chr11:99320544-99320616
Coord A exon
chr11:99320338-99320436
Coord C2 exon
chr11:99319764-99319866
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATGTCTGCTTCCTCTCCAGAAA
3' ss Score
10.32
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
GAGGTGAAGATTGACAAGAACTTGGAGCCTGGACTTCGGGTGACAGTGCGGCTCAACCAGAACCAGCTCCCAG
Seq A exon
AAAGTAAGACCTACCGGGGGAAGGTCGTGTCGTCGCAGGACCCTCGGACCAAAGCTGGTCTCTACTGGGGCTACACAGTCCGCCTGGCCTCTTGCCTCA
Seq C2 exon
GTGCTGTGTTTGCTGAGGCCCCCTTCCAGGACGGCTATGATCTGACCATCGGGACATCAGAGCGAGGCTCAGATGTGGCCTCTGCCCAGCTTCCCAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.265 C2=0.086
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACAAGAACTTGGAGCCTGG
R:
CTGAAGTTGGGAAGCTGGGC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]