HsaINT0025315 @ hg38
Intron Retention
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128824771-128825049:-
Coord C1 exon
chr9:128824977-128825049
Coord A exon
chr9:128824870-128824976
Coord C2 exon
chr9:128824771-128824869
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
AGACTCTGTTACCCCTCCAGACT
3' ss Score
6.48
Exon sequences
Seq C1 exon
GAGGTGAAGATTGACAAGAACCTGGAGCCCGGGCTTCGGGTGACTGTGCGACTGAACCAGCAGCAGCACCCAG
Seq A exon
GTATCTGGAAGGTTCCCCAACCCCTGGGTTGGCCTGATGAGCTCCAGGGTTCAGCCACCTGCTTCCATTCCCTCACCCCATCTTTACAGACTCTGTTACCCCTCCAG
Seq C2 exon
ACTGCAAGACCTACCATGGCAAAGTGGTATCATCGCAGGACCCTCGCACCAAAGCTGGTCTCTACTGGGGCTACACCGTCCGACTGGCTTCCTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917:ENST00000361256:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=PU(24.6=94.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAAGATTGACAAGAACCTGG
R:
GAAGCCAGTCGGACGGTGTAG
Band lengths:
163-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development