MmuEX6100211 @ mm9
Exon Skipping
Gene
ENSMUSG00000039660 | D2Wsu81e
Description
DNA segment, Chr 2, Wayne State University 81, expressed [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30031439-30032184:-
Coord C1 exon
chr2:30032135-30032184
Coord A exon
chr2:30031882-30032012
Coord C2 exon
chr2:30031439-30031511
Length
131 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTGTTCCCTGCCCAGGAA
3' ss Score
10.1
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTACCTGAGAAAGGCGTTCTTCCCCAAGCACCAAGATCTGCAGTTTGCAG
Seq A exon
GAATCCTCAACCCCTTGGACAGCCCTCACCACATGCGTCAGGACGAAGAGTCTGAGTTTCGAGAAGGCGTCGTGGTGGACCGGCCCACCAAGGCAGGCCATGGCTCTTTGGTCAACTGTGGAATGAAGAAG
Seq C2 exon
GAGGTGAAGATTGACAAGAAACTGGACCCTGGACTTCGGGTGACCGTGCGACTGAACCAGCAGCAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-'10-10,'10-7,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.409 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
A:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGGCGTTCTTCCCCAAG
R:
CTGCTGGTTCAGTCGCACG
Band lengths:
106-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: