HsaEX6063354 @ hg19
Exon Skipping
Gene
ENSG00000198917 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:26933]
Coordinates
chr9:131587256-131588712:-
Coord C1 exon
chr9:131588663-131588712
Coord A exon
chr9:131588301-131588431
Coord C2 exon
chr9:131587256-131587328
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCCCGGCTCTGCCTCCACAGGGC
3' ss Score
10.84
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTACCTGAGGAAGGCGTTCTTCCCCAAGCACCAGGATCTACAGTTTGCAG
Seq A exon
GGCTCCTGAACCCCCTGGACAGCCCCCACCACATGCGTCAGGATGAGGAATCCGAGTTCCGAGAGGGCATCGTGGTGGATCGGCCCACCCGGCCAGGCCACGGCTCCTTTGTCAACTGTGGCATGAAAAAG
Seq C2 exon
GAGGTGAAGATTGACAAGAACCTGGAGCCCGGGCTTCGGGTGACTGTGCGACTGAACCAGCAGCAGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.489 C2=0.060
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
A:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCGTTCTTCCCCAAGC
R:
CTGGGTGCTGCTGCTGGT
Band lengths:
114-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)