RnoEX6016275 @ rn6
Exon Skipping
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8746432-8747706:-
Coord C1 exon
chr3:8747657-8747706
Coord A exon
chr3:8747385-8747515
Coord C2 exon
chr3:8746432-8746504
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTGTCCCCTGCCCAGGAA
3' ss Score
9.17
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTATCTGAGGAAAGCGTTCTTCCCCAAGCACCAGGATCTGCAGTTTGCAG
Seq A exon
GAATCCTCAACCCGTTGGACAGCCCTCACCACATGCGTCAGGATGAAGAATCTGAGTTCAGAGAAGGCGTCGTGGTGGACCGGCCCACCAAGGCTGGCCACGGCTCTTTGGTCAACTGTGGAATGAAGAAG
Seq C2 exon
GAAGTGAAGATTGATAAGAAACTGGACCCTGGACTTCGGGTGACCGTGCGGCTGAACCAGCAGCAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-'8-11,'8-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.409 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
A:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAAAGCGTTCTTCCCC
R:
CTGGTTCAGCCGCACGGT
Band lengths:
106-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]