GgaEX1011721 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5909745-5910657:-
Coord C1 exon
chr17:5910608-5910657
Coord A exon
chr17:5910242-5910372
Coord C2 exon
chr17:5909745-5909817
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTGCACTGTTCCAGGGC
3' ss Score
9.22
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTACTTGAGGAAATCATTTTTTCCAAAACATGGGGATCTGCAGTTTGCAG
Seq A exon
GGCTCCTCAACCCACTGGACAGCCCCCACCACATGCGGGTGGATGAGGATTCTGAGTACCGAGAAGGTGTGGTGTTAGATCGGCCAAGCAAGCCAGGCAGAGGCTCATTTGTCAACTGTGGGATGAAGAAG
Seq C2 exon
GAGGTACAGATTGACAAACAGCTGAAGCCTGGTCTGCGTGTCACTGTGCGCCTGCAGGAACCACAGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.205 C2=0.440
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
A:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAACATGGGGATCTGCAGT
R:
GGATTCTGTGGTTCCTGCAGG
Band lengths:
99-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]