BtaEX6046538 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99320544-99322107:-
Coord C1 exon
chr11:99322058-99322107
Coord A exon
chr11:99321702-99321832
Coord C2 exon
chr11:99320544-99320616
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGGCCCCTCTACAACCGCAGGGC
3' ss Score
7.5
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTACCTAAGAAAGGCCTTCTTCCCCAAGCATCAGGATCTGCAGTTTGCAG
Seq A exon
GGCTCCTGAACCCCTTGGACAGCCCTCACCACATGCGTCAAGATGAGGAATCTGAGTTCCGAGAGGGTGTTGTGGTGGACCGGCCCACCCGGCCTGGCCAGGGCTCCTTTGTCAACTGTGGCATGAAGAAG
Seq C2 exon
GAGGTGAAGATTGACAAGAACTTGGAGCCTGGACTTCGGGTGACAGTGCGGCTCAACCAGAACCAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.432 C2=0.040
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
A:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGCCTTCTTCCCCAAGC
R:
TGGGAGCTGGTTCTGGTTGAG
Band lengths:
114-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]