BtaEX6046536 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99322058-99322696:-
Coord C1 exon
chr11:99322537-99322696
Coord A exon
chr11:99322211-99322300
Coord C2 exon
chr11:99322058-99322107
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTCTTTCTCTCCTAGGAC
3' ss Score
12.88
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GGCGGCACTACACCCTGAGCGTGGCTCTGCCAGGCTCTATCCTGGACAATGCCCAGTCACCGGAGCTTCGCACCTACCTGGCCGGCCAGATCGCCAGAGCCTGCGCCATCTTCTGTGTGGATGAGATCGTGGTGTTCGATGAAGAAGGCCAAGATGCCAA
Seq A exon
GACCGTGGAGGGGGAATTCAGGGGAGTTGGCAAGAAGGGGCAGGCGTGCGTGCAGCTGGCCCGGATACTGCAATACCTGGAATGTCCACA
Seq C2 exon
GTACCTAAGAAAGGCCTTCTTCCCCAAGCATCAGGATCTGCAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485-'5-4,'5-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PU(16.7=90.7)
A:
PF0259812=Methyltrn_RNA_3=FE(10.2=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTATCCTGGACAATGCCC
R:
CTGCAGATCCTGATGCTTGGG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]