GgaEX0006264 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5910608-5911764:-
Coord C1 exon
chr17:5911605-5911764
Coord A exon
chr17:5910955-5911044
Coord C2 exon
chr17:5910608-5910657
Length
90 bp
Sequences
Splice sites
3' ss Seq
CAGACTGTTCTCTCTTTCAGGAG
3' ss Score
10.94
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGCGGCACTACACGCTGAGCGTGGCCCTGCCGGGCTCCATCCTGAACAACGCGCAGTCGCTGGAGCTGCGGACGTACCTGGCCGGGCAGATCGCTCGAGCGTGTGCCATCTTCTGCGTGGATGAGATCGTGGTGTTCGACGAGCATGGAGAAGATGCAAA
Seq A exon
GAGCGTGGAAGGGGAATTTGAAGGAATTGGGAAGAGAGGCAAGGCTTGTGTGCAGCTGGCTCGGATACTGCAGTACTTGGAGTGCCCTCA
Seq C2 exon
GTACTTGAGGAAATCATTTTTTCCAAAACATGGGGATCTGCAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622_MULTIEX1-4/6=3-5
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF093445=Cas_CT1975=PD(32.8=79.6),PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
A:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCCATCCTGAACAACG
R:
GCAAACTGCAGATCCCCATGT
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]