DreEX0001421 @ danRer10
Exon Skipping
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3646998-3650235:+
Coord C1 exon
chr21:3646998-3647157
Coord A exon
chr21:3647825-3647914
Coord C2 exon
chr21:3650186-3650235
Length
90 bp
Sequences
Splice sites
3' ss Seq
AGGTTTTCTTAATGTTTCAGGAG
3' ss Score
7.9
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCGTCTTTATACAGTGAGCGTGGCTCTGCCTGGATCAGTGATGGATAACGCTCAGTCTCCAGAGCTGCGGACGTATCTGGCTGGTCAGATCGCCCGAGCGTGTGCTGTTTTCTGTGTGGATGAGGTGGTCATTTTTGACGAGCTGGGAGAAGACGCAAA
Seq A exon
GAGCGTTGAAGGAGAGTTTAAAGGTGTGGGTAAGAAAGGCCAGTCCTGTGTCCAGCTGGCACGCATCCTGCAGTACCTCGAGTGTCCACA
Seq C2 exon
ATATCTACGGAAATTCTTCTTCCCGAAGCATCAGGATCTGCAGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PU(82.8=88.9),PF0259812=Methyltrn_RNA_3=PU(0.1=0.0)
A:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCCTGGATCAGTGATG
R:
CTGCAGATCCTGATGCTTCGG
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]