RnoEX0085615 @ rn6
Exon Skipping
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8747657-8748604:-
Coord C1 exon
chr3:8748445-8748604
Coord A exon
chr3:8747795-8747884
Coord C2 exon
chr3:8747657-8747706
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCCTGTCTTAATCTTTCCAGGAG
3' ss Score
8.7
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACGGCCTTACACTCTGAGTGTGGCCCTGCCAGGCTCCATCCTGGACAACGCCCAGTCACCTGAACTCCGCACCTACCTGGCTGGCCAGATCGCCAGAGCCTGCGCCATCTTCTGTGTGGATGAGATTGTGGTGTTCGATGAGGAGGGCCAGGATACCAA
Seq A exon
GAGTGTGGAGGGAGAATTCAGGGGCGTTGGCAAGAAGGGGCAGGCATGTGTCCAGCTGGCCCGCATCCTGCAGTACCTGGAGTGTCCACA
Seq C2 exon
GTATCTGAGGAAAGCGTTCTTCCCCAAGCACCAGGATCTGCAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.129 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
A:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCCATCCTGGACAACG
R:
AACTGCAGATCCTGGTGCTTG
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]