MmuEX6100209 @ mm9
Exon Skipping
Gene
ENSMUSG00000039660 | D2Wsu81e
Description
DNA segment, Chr 2, Wayne State University 81, expressed [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30032135-30033002:-
Coord C1 exon
chr2:30032843-30033002
Coord A exon
chr2:30032259-30032348
Coord C2 exon
chr2:30032135-30032184
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTTAATCTTTCCAGGAG
3' ss Score
8.72
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GACGGCCTTACACTCTGAGTGTGGCCCTGCCAGGCTCCATCCTGGACAATGCCCAGTCACCTGAGCTCCGCACCTACCTGGCTGGCCAGATCGCCAGAGCCTGCACCATCTTCTGTGTGGATGAGATTGTGGTGTTCGATGAGGAGGGCCAAGATACCAA
Seq A exon
GAGTGTGGAAGGAGAATTCAGGGGAGTTGGCAAGAAAGGGCAGGCATGTGTCCAGCTGGCCCGCATCCTACAGTACCTGGAGTGTCCACA
Seq C2 exon
GTACCTGAGAAAGGCGTTCTTCCCCAAGCACCAAGATCTGCAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.129 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PU(16.8=90.7)
A:
PF0259812=Methyltrn_RNA_3=FE(10.3=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATCCTGGACAATGCC
R:
ACTGCAGATCTTGGTGCTTGG
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: