GgaEX0006266 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5908205-5909389:-
Coord C1 exon
chr17:5909291-5909389
Coord A exon
chr17:5908517-5908619
Coord C2 exon
chr17:5908205-5908352
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTGTTTGTTTGCCAGGCG
3' ss Score
8.38
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
Exon sequences
Seq C1 exon
AAACTAAAGTACGAAAAGGCACTGTGGTGTCTTCGCACCACCCTCGCACGGTGTCCGGTTTGTACTGGGGTTACAGCGTCCGCCTTGCCTCCTGCCTGA
Seq A exon
GCGCTGTCTTTTCAGAATGTCCGTTTAAGGAAGGCTATGATGTCTCTATTGGGACCTCAGAGCGGGGTAACTCCGTGGACCAGGTCACCCTCCCCTCCTTTAG
Seq C2 exon
GCACATGCTTGTTGTATTTGGAGGTCTTCAGGGCTTGGAAGCTGGGGTTGATGCAGACCCAAACCTGGAGGTCACCGACCCGAGCGTCTTGTTTGACTTCTACCTGAACACCTGTCCCAGCCAAGGCAGCCGAACCATCCGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622-'9-13,'9-11,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.029 C2=0.040
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTACGAAAAGGCACTGTGGT
R:
CTCTGTTCGGATGGTTCGGC
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]