BtaEX6046541 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99319470-99320436:-
Coord C1 exon
chr11:99320338-99320436
Coord A exon
chr11:99319764-99319866
Coord C2 exon
chr11:99319470-99319620
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGAGCTGGCCTCCCCGGCAGGTG
3' ss Score
8.32
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAGTAAGACCTACCGGGGGAAGGTCGTGTCGTCGCAGGACCCTCGGACCAAAGCTGGTCTCTACTGGGGCTACACAGTCCGCCTGGCCTCTTGCCTCA
Seq A exon
GTGCTGTGTTTGCTGAGGCCCCCTTCCAGGACGGCTATGATCTGACCATCGGGACATCAGAGCGAGGCTCAGATGTGGCCTCTGCCCAGCTTCCCAACTTCAG
Seq C2 exon
CAGGCACGCTCTCGTGGTGTTTGGGGGCCTCCAGGGGCTGGAAGCTGGAGTGGATGCCGACCCCAACCTGGAGGTGGCTGAGCCCAGCGTTCTCTTCGACCTGTACGTCAACACCTGCCCCAACCAGGGCAGCCGCACCATCCGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485-'12-11,'12-10,13-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGACCTACCGGGGGAAGG
R:
CTCTGTGCGGATGGTGCG
Band lengths:
247-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]